Package: indicspecies 1.7.15
indicspecies: Relationship Between Species and Groups of Sites
Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].
Authors:
indicspecies_1.7.15.tar.gz
indicspecies_1.7.15.zip(r-4.5)indicspecies_1.7.15.zip(r-4.4)indicspecies_1.7.15.zip(r-4.3)
indicspecies_1.7.15.tgz(r-4.4-any)indicspecies_1.7.15.tgz(r-4.3-any)
indicspecies_1.7.15.tar.gz(r-4.5-noble)indicspecies_1.7.15.tar.gz(r-4.4-noble)
indicspecies_1.7.15.tgz(r-4.4-emscripten)indicspecies_1.7.15.tgz(r-4.3-emscripten)
indicspecies.pdf |indicspecies.html✨
indicspecies/json (API)
NEWS
# Install 'indicspecies' in R: |
install.packages('indicspecies', repos = c('https://emf-creaf.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/emf-creaf/indicspecies/issues
- birdsbreed - Birds resource use data
- birdswinter - Birds resource use data
- dfood - Pigeon seed consumption data
- diet.barcelona - Pigeon seed consumption data
- diet.moia - Pigeon seed consumption data
- resourceD - Birds resource use data
- wetland - Wetland vegetation data set
Last updated 3 months agofrom:fd85bc42c7. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 04 2024 |
R-4.5-win | OK | Nov 04 2024 |
R-4.5-linux | OK | Nov 04 2024 |
R-4.4-win | OK | Nov 04 2024 |
R-4.4-mac | OK | Nov 04 2024 |
R-4.3-win | OK | Nov 04 2024 |
R-4.3-mac | OK | Nov 04 2024 |
Exports:combinespeciescoverageindicatorsmultipattnichecentroidnichedisplnicheoverlapnicheprefnichevarplot.indicatorsplotcoverageplotnichepredict.indicatorsprint.indicatorspruneindicatorssignassocstrassocsummary.indicatorssummary.multipatt
Dependencies:permute
Indicator species analysis
Rendered fromIndicatorSpeciesAnalysis.Rmd
usingknitr::rmarkdown
on Nov 04 2024.Last update: 2024-08-21
Started: 2021-06-04
Usage of the niche metric functions (former 'resniche' package)
Rendered fromPigeonExample.Rmd
usingknitr::rmarkdown
on Nov 04 2024.Last update: 2023-07-19
Started: 2021-06-04
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Birds resource use data | birds birdsbreed birdswinter resourceD |
Combines species from a community table | combinespecies |
Coverage of a set of indicators | coverage plotcoverage |
Indicator analysis for species combinations | indicators plot.indicators print.indicators summary.indicators |
Multi-level pattern analysis | multipatt |
Resource niche metrics for a single niche | nichecentroid nichepref nichevar |
Metrics to compare pairs of resource niches | nichedispl nicheoverlap |
Pigeon seed consumption data | dfood diet.barcelona diet.moia pigeons |
Draws a single resource niche | plotniche |
Predicts site group from indicators | predict.indicators |
Determines the best subset of indicators | pruneindicators |
Statistical significance of species site-group associations | signassoc |
Strength of species site-group associations | strassoc |
Summarizing multi-level pattern analysis | summary.multipatt |
Wetland vegetation data set | wetland |