Package: indicspecies 1.8.0

Miquel De Cáceres

indicspecies: Relationship Between Species and Groups of Sites

Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].

Authors:Miquel De Cáceres [aut, cre], Florian Jansen [aut], Sarah Endicott [aut], Noah Dell [aut]

indicspecies_1.8.0.tar.gz
indicspecies_1.8.0.zip(r-4.7)indicspecies_1.8.0.zip(r-4.6)indicspecies_1.8.0.zip(r-4.5)
indicspecies_1.8.0.tgz(r-4.6-any)indicspecies_1.8.0.tgz(r-4.5-any)
indicspecies_1.8.0.tar.gz(r-4.7-any)indicspecies_1.8.0.tar.gz(r-4.6-any)
indicspecies_1.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
indicspecies/json (API)
NEWS

# Install 'indicspecies' in R:
install.packages('indicspecies', repos = c('https://emf-creaf.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/emf-creaf/indicspecies/issues

Pkgdown/docs site:https://emf-creaf.github.io

Datasets:

On CRAN:

Conda:

8.31 score 12 stars 524 scripts 3.3k downloads 218 mentions 19 exports 1 dependencies

Last updated from:3d15f35e32. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK135
source / vignettesOK154
linux-release-x86_64OK167
macos-release-arm64OK157
macos-oldrel-arm64OK126
windows-develOK180
windows-releaseOK94
windows-oldrelOK86
wasm-releaseOK100

Exports:combinespeciescoverageindicatorsmultipattnichecentroidnichedisplnicheoverlapnicheprefnichevarplot.indicatorsplotcoverageplotnichepredict.indicatorsprint.indicatorspruneindicatorssignassocstrassocsummary.indicatorssummary.multipatt

Dependencies:permute

Indicator species analysis

Miquel De Cáceres, CREAF

Rendered fromIndicatorSpeciesAnalysis.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2025-02-20
Started: 2021-06-04

Usage of the niche metric functions (former 'resniche' package)

Miquel De Cáceres, CREAF, Oriol Lapiedra, CREAF

Rendered fromPigeonExample.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2023-07-19
Started: 2021-06-04