Package: medfateland 3.0.0

Miquel De Cáceres

medfateland: Mediterranean Landscape Simulation

Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.

Authors:Miquel De Cáceres [aut, cre], Aitor Améztegui [aut], María González [aut], Núria Aquilué [aut], Daniel Caviedes-Voullième [aut], Mario Morales-Hernández [aut], Mario Beltrán [ctb], Rodrigo Balaguer-Romano [ctb], Roberto Molowny-Horas [ctb]

medfateland_3.0.0.tar.gz
medfateland_3.0.0.zip(r-4.7)medfateland_3.0.0.zip(r-4.6)medfateland_3.0.0.zip(r-4.5)
medfateland_3.0.0.tgz(r-4.6-x86_64)medfateland_3.0.0.tgz(r-4.6-arm64)medfateland_3.0.0.tgz(r-4.5-x86_64)medfateland_3.0.0.tgz(r-4.5-arm64)
medfateland_3.0.0.tar.gz(r-4.7-arm64)medfateland_3.0.0.tar.gz(r-4.7-x86_64)medfateland_3.0.0.tar.gz(r-4.6-arm64)medfateland_3.0.0.tar.gz(r-4.6-x86_64)
medfateland_3.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
medfateland/json (API)

# Install 'medfateland' in R:
install.packages('medfateland', repos = c('https://emf-creaf.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/emf-creaf/medfateland/issues

Pkgdown/docs site:https://emf-creaf.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

5.42 score 5 stars 58 scripts 255 downloads 41 exports 86 dependencies

Last updated from:bc64cc3844. Checks:11 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING306
linux-devel-x86_64WARNING317
source / vignettesOK313
linux-release-arm64WARNING303
linux-release-x86_64WARNING326
macos-release-arm64WARNING239
macos-release-x86_64WARNING622
macos-oldrel-arm64WARNING263
macos-oldrel-x86_64WARNING430
windows-develWARNING358
windows-releaseWARNING297
windows-oldrelWARNING287
wasm-releaseOK177

Exports:add_forestsadd_land_coveradd_soilgridsadd_topographycell_neighborscheck_forestscheck_land_covercheck_soilscheck_topographycreate_fire_regimecreate_management_scenariodefault_dispersal_controldefault_volume_functiondefault_watershed_controldispersalextract_variablesfire_regime_instancefordyn_landfordyn_scenariofordyn_spatialgrowth_landgrowth_land_daygrowth_spatialgrowth_spatial_dayimpute_forestsinitialize_landscapelandscape_summarymodify_forest_structuremodify_soilsoptimization_rockoverland_routingparse_forestableplot_summaryplot_variablesimulation_summaryspwb_landspwb_land_dayspwb_spatialspwb_spatial_dayunnest_summaryupdate_landscape

Dependencies:abindarealaskpassassertthatbase64encbslibcachemCFtimeclassclassIntclicommonmarkcpp11cubelyrcurldata.tableDBIdigestdplyre1071farverfastmapfontawesomefsgenericsggplot2gluegtablehtmltoolshttpuvhttrisobandjquerylibjsonliteKernSmoothlabelinglaterlifecyclelubridatemagrittrMASSmedfatememoisemeteolandmimencdfgeomncmetaopensslotelpillarpkgconfigpromisesproxypurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppParallelrlangRNetCDFs2S7sassscalessfshinysourcetoolsstarsstringistringrsysterratibbletidyrtidyselecttidyterratimechangeunitsutf8vctrsviridisLitewithrwkxtable

Readme and manuals

Help Manual

Help pageTopics
Add forestsadd_forests
Add topography and land coveradd_land_cover add_topography
Check spatial inputscheck_forests check_inputs check_land_cover check_soils check_topography
Create fire regimecreate_fire_regime
Create management scenariocreate_management_scenario
Default control parameters for dispersaldefault_dispersal_control
Default volume functiondefault_volume_function
Default control parameters for watershed processesdefault_watershed_control
Default prescriptions by speciesdefaultPrescriptionsBySpecies
Seed production, dispersal and seed bank dynamicsdispersal
Example of distributed forest inventory standsexample_ifn
Example of watershedexample_watershed example_watershed_burnin
Landscape variablesextract_variables plot_variable
Fire regime instancefire_regime_instance
Scenario of forest dynamicsfordyn_scenario
Landscape forest parametrizationforest_parametrization impute_forests modify_forest_structure
Initialization of model inputs for spatially-distributed forest standsinitialize_landscape
Forest and soil summaries over spacelandscape_summary
Rock optimizationoptimization_rock
Overland routing for TETIS sub-modelcell_neighbors overland_routing
Parse forestableparse_forestable
Displays spatial simulation summariesplot_summary
Displays watershed-level simulation resultsplot.fordyn_land plot.growth_land plot.spwb_land
Shiny app with interactive plots and mapsshinyplot.sf
Shiny app with interactive plots and maps of watershed simulation resultsshinyplot.fordyn_land shinyplot.growth_land shinyplot.spwb_land
Summarizes spatial simulation resultssimulation_summary
Landscape soil parametrizationadd_soilgrids modify_soils soil_parametrization
Watershed simulationsfordyn_land growth_land spwb_land summary.growth_land summary.spwb_land
One-day watershed simulationsgrowth_land_day spwb_land_day
Simulations for spatially-distributed forest standsfordyn_spatial growth_spatial spwb_spatial
One-day simulation for spatially-distributed forest standsgrowth_spatial_day spwb_spatial_day
Extracts cell simulation summariesunnest_summary
Updates the state of a landscape objectupdate_landscape