Package: medfateland 2.5.0

Miquel De Cáceres

medfateland: Mediterranean Landscape Simulation

Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.

Authors:Miquel De Cáceres [aut, cre], Aitor Améztegui [aut], María González [aut], Núria Aquilué [aut], Daniel Caviedes-Voullième [aut], Mario Morales-Hernández [aut], Mario Beltrán [ctb], Rodrigo Balaguer-Romano [ctb], Roberto Molowny-Horas [ctb]

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medfateland.pdf |medfateland.html✨
medfateland/json (API)

# Install 'medfateland' in R:
install.packages('medfateland', repos = c('https://emf-creaf.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/emf-creaf/medfateland/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

5.34 score 5 stars 34 scripts 375 downloads 39 exports 90 dependencies

Last updated 18 days agofrom:e7ef96e9fe. Checks:OK: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-win-x86_64WARNINGOct 30 2024
R-4.5-linux-x86_64WARNINGOct 30 2024
R-4.4-win-x86_64WARNINGOct 30 2024
R-4.4-mac-x86_64WARNINGOct 30 2024
R-4.4-mac-aarch64WARNINGOct 30 2024
R-4.3-win-x86_64WARNINGOct 30 2024
R-4.3-mac-x86_64WARNINGOct 30 2024
R-4.3-mac-aarch64WARNINGOct 30 2024

Exports:add_forestsadd_land_coveradd_soilgridsadd_topographycell_neighborscheck_forestscheck_land_covercheck_soilscheck_topographycreate_fire_regimecreate_management_scenariodefault_dispersal_controldefault_volume_functiondefault_watershed_controldispersalextract_variablesfire_regime_instancefordyn_landfordyn_scenariofordyn_spatialgrowth_landgrowth_land_daygrowth_spatialgrowth_spatial_dayimpute_forestsinitialize_landscapelandscape_summarymodify_forest_structuremodify_soilsparse_forestableplot_summaryplot_variableshinyplot_landsimulation_summaryspwb_landspwb_land_dayspwb_spatialspwb_spatial_dayupdate_landscape

Dependencies:abindarealaskpassassertthatbase64encbslibcachemCFtimeclassclassIntclicolorspacecommonmarkcpp11crayoncubelyrcurldata.tableDBIdigestdplyre1071fansifarverfastmapfontawesomefsgenericsggplot2gluegtablehtmltoolshttpuvhttrisobandjquerylibjsonliteKernSmoothlabelinglaterlatticelifecyclelubridatemagrittrMASSMatrixmedfatememoisemeteolandmgcvmimemunsellncdfgeomncmetanlmeopensslpillarpkgconfigpromisesproxypurrrR6rappdirsRColorBrewerRcpprlangRNetCDFs2sassscalessfshinysourcetoolsstarsstringistringrsysterratibbletidyrtidyselecttidyterratimechangeunitsutf8vctrsviridisLitewithrwkxtable

Readme and manuals

Help Manual

Help pageTopics
Add forestsadd_forests
Add topography and land coveradd_land_cover add_topography
Check spatial inputscheck_forests check_inputs check_land_cover check_soils check_topography
Create fire regimecreate_fire_regime
Create management scenariocreate_management_scenario
Default control parameters for dispersaldefault_dispersal_control
Default volume functiondefault_volume_function
Default control parameters for watershed processesdefault_watershed_control
Default prescriptions by speciesdefaultPrescriptionsBySpecies
Seed production, dispersal and seed bank dynamicsdispersal
Example of distributed forest inventory standsexample_ifn
Example of watershedexample_watershed example_watershed_burnin
Landscape variablesextract_variables plot_variable
Fire regime instancefire_regime_instance
Scenario of forest dynamicsfordyn_scenario
Landscape forest parametrizationforest_parametrization impute_forests modify_forest_structure
Initialization of model inputs for spatially-distributed forest standsinitialize_landscape
Forest and soil summaries over spacelandscape_summary
Parse forestableparse_forestable
Displays spatial simulation summariesplot_summary
Shiny app with interactive plots and mapsshinyplot_land
Summarizes spatial simulation resultssimulation_summary
Landscape soil parametrizationadd_soilgrids modify_soils soil_parametrization
Watershed simulationscell_neighbors fordyn_land growth_land spwb_land summary.growth_land summary.spwb_land
One-day watershed simulationsgrowth_land_day spwb_land_day
Simulations for spatially-distributed forest standsfordyn_spatial growth_spatial spwb_spatial
One-day simulation for spatially-distributed forest standsgrowth_spatial_day spwb_spatial_day
Updates the state of a landscape objectupdate_landscape