Package: ecotraj 1.2.2
Miquel De Cáceres
ecotraj: Ecological Trajectory Analysis
Analysis of temporal changes (i.e. dynamics) of ecological entities, defined as trajectories on a chosen multivariate space, by providing a set of trajectory metrics and visual representations [De Caceres et al. (2019) <doi:10.1002/ecm.1350>; and Sturbois et al. (2021) <doi:10.1016/j.ecolmodel.2020.109400>; Djeghri et al. (2026 <doi:10.1002/ecm.70058>)]. Includes functions to estimate metrics for individual trajectories (length, directionality, angles, ...) as well as metrics to relate pairs of trajectories (dissimilarity and convergence). Functions are also provided to estimate the ecological quality of ecosystem with respect to reference conditions [Sturbois et al. (2023) <doi:10.1002/ecs2.4726>].
Authors:
ecotraj_1.2.2.tar.gz
ecotraj_1.2.2.zip(r-4.7)ecotraj_1.2.2.zip(r-4.6)ecotraj_1.2.2.zip(r-4.5)
ecotraj_1.2.2.tgz(r-4.6-x86_64)ecotraj_1.2.2.tgz(r-4.6-arm64)ecotraj_1.2.2.tgz(r-4.5-x86_64)ecotraj_1.2.2.tgz(r-4.5-arm64)
ecotraj_1.2.2.tar.gz(r-4.7-arm64)ecotraj_1.2.2.tar.gz(r-4.7-x86_64)ecotraj_1.2.2.tar.gz(r-4.6-arm64)ecotraj_1.2.2.tar.gz(r-4.6-x86_64)
ecotraj_1.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ecotraj/json (API)
NEWS
| # Install 'ecotraj' in R: |
| install.packages('ecotraj', repos = c('https://emf-creaf.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/emf-creaf/ecotraj/issues
Pkgdown/docs site:https://emf-creaf.github.io
- avoca_sites - Avoca permanent plot dataset
- avoca_strat - Avoca permanent plot dataset
- avoca_surveys - Avoca permanent plot dataset
- furseals - Furseals dataset
- glenan - Glenan dataset
- glomel - Glomel vegetation dataset
- heatmapdata - Heatmapdata dataset
- isoscape - Isoscape dataset
- northseaZoo - North Sea zooplankton dataset
- pike - Pike dataset
Last updated from:0c5b48361c. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 152 | ||
| linux-devel-x86_64 | OK | 161 | ||
| source / vignettes | OK | 206 | ||
| linux-release-arm64 | OK | 145 | ||
| linux-release-x86_64 | OK | 156 | ||
| macos-release-arm64 | OK | 193 | ||
| macos-release-x86_64 | OK | 251 | ||
| macos-oldrel-arm64 | OK | 101 | ||
| macos-oldrel-x86_64 | OK | 212 | ||
| windows-devel | OK | 156 | ||
| windows-release | OK | 116 | ||
| windows-oldrel | OK | 131 | ||
| wasm-release | OK | 125 |
Exports:averageTrajectoriescenterTrajectoriescompareToStateEnvelopecompareToTrajectoryEnvelopecycleConvexitycycleMetricscyclePCoAcycleShiftArrowscycleShiftsdefineTrajectoriesdynamicVariationextractCyclesextractFixedDateTrajectoriesextractTrajectorySectionsfixedDateTrajectoryPCoAinterpolateTrajectoriesis.metricis.synchronoussegmentDistancessmoothTrajectoriesstateEnvelopeVariabilitysubsetTrajectoriestrajectoryAnglestrajectoryAngles2DtrajectoryConvergencetrajectoryConvergencePlottrajectoryCorrespondencetrajectoryDirectionalitytrajectoryDistancestrajectoryEnvelopeVariabilitytrajectoryInternalVariationtrajectoryLengthstrajectoryLengths2DtrajectoryMetricstrajectoryPCoAtrajectoryPlottrajectoryProjectiontrajectoryRMAtrajectoryRMAPlottrajectoryShiftstrajectorySpeedstrajectorySpeeds2DtrajectoryWindowMetricsvariationDecomposition
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Avoca permanent plot dataset | avoca avoca_sites avoca_strat avoca_surveys |
| Displaying cycle shifts | cycleShiftArrows |
| Trajectory definition | defineTrajectories trajectories |
| Dynamic variation and variation decomposition | dynamicVariation variationDecomposition |
| furseals dataset | furseals |
| Glenan dataset | glenan |
| Glomel vegetation dataset | glomel |
| heatmapdata dataset | heatmapdata |
| Metricity | is.metric |
| Synchronicity in trajectory observations | is.synchronous |
| isoscape dataset | isoscape |
| North Sea zooplankton dataset | northseaZoo |
| pike dataset | pike |
| Ecological quality assessment | compareToStateEnvelope compareToTrajectoryEnvelope referenceEnvelopes stateEnvelopeVariability trajectoryEnvelopeVariability |
| Trajectory subsetting | subsetTrajectories |
| Trajectory comparison | segmentDistances trajectoryComparison trajectoryConvergence trajectoryCorrespondence trajectoryDistances trajectoryShifts |
| Summary plot for trajectory convergence and divergence | trajectoryConvergencePlot |
| Functions for Cyclical Ecological Trajectory Analysis | cycleConvexity cycleMetrics cycles cycleShifts extractCycles extractFixedDateTrajectories fd.trajectories trajectoryCyclical |
| Cyclical trajectory plots | cyclePCoA fixedDateTrajectoryPCoA trajectoryCyclicalPlots |
| Trajectory metrics | trajectoryAngles trajectoryAngles2D trajectoryDirectionality trajectoryInternalVariation trajectoryLengths trajectoryLengths2D trajectoryMetrics trajectorySpeeds trajectorySpeeds2D trajectoryWindowMetrics |
| Trajectory plots | trajectoryPCoA trajectoryPlot |
| Trajectory projection | trajectoryProjection |
| Relative Trajectory Movement Assessment (RTMA) | RTMA trajectoryRMA |
| Heat map-like plots for Relative Trajectory Movement Assessment (RTMA) | trajectoryRMAPlot |
| Transform trajectories | averageTrajectories centerTrajectories interpolateTrajectories smoothTrajectories transformTrajectories |
